dolfinx.geometry

Methods for geometric searches and operations

Functions

compute_colliding_cells(mesh, candidates, x)

From a mesh, find which cells collide with a set of points.

squared_distance(mesh, dim, entities, points)

Compute the squared distance between a point and a mesh entity.

Classes

BoundingBoxTree(mesh, dim[, entities, padding])

A class for representing bounding box trees used in collision detection.
dolfinx.geometry.compute_closest_entity(tree: dolfinx::geometry::BoundingBoxTree, midpoint_tree: dolfinx::geometry::BoundingBoxTree, mesh: dolfinx.cpp.mesh.Mesh, points: numpy.ndarray[numpy.float64]) → numpy.ndarray[numpy.int32]
dolfinx.geometry.compute_colliding_cells(mesh: Mesh, candidates: AdjacencyList_int32, x: numpy.ndarray)[source]

From a mesh, find which cells collide with a set of points.

Parameters

  • mesh – The mesh

  • candidate_cells – Adjacency list of candidate colliding cells for the ith point in x

  • points – The points to check for collision shape=(num_points, 3)

Returns

Adjacency list where the ith node is the list of entities that collide with the ith point

dolfinx.geometry.compute_collisions(*args, **kwargs)

Overloaded function.

  1. compute_collisions(arg0: dolfinx::geometry::BoundingBoxTree, arg1: numpy.ndarray[numpy.float64]) -> dolfinx.cpp.graph.AdjacencyList_int32

  2. compute_collisions(arg0: dolfinx::geometry::BoundingBoxTree, arg1: dolfinx::geometry::BoundingBoxTree) -> List[List[int[2]]]

dolfinx.geometry.compute_distance_gjk(arg0: numpy.ndarray[numpy.float64], arg1: numpy.ndarray[numpy.float64]) → numpy.ndarray[numpy.float64]
dolfinx.geometry.create_midpoint_tree(arg0: dolfinx.cpp.mesh.Mesh, arg1: int, arg2: numpy.ndarray[numpy.int32]) → dolfinx::geometry::BoundingBoxTree
dolfinx.geometry.squared_distance(mesh: Mesh, dim: int, entities: List[int], points: numpy.ndarray)[source]

Compute the squared distance between a point and a mesh entity.

The distance is computed between the ith input points and the ith input entity.

Parameters

  • mesh – Mesh containing the entities

  • dim – The topological dimension of the mesh entities

  • entities – Indices of the mesh entities (local to process)

  • points – Set points from which to computed the shortest distance (shape=(num_points, 3))

Returns

Squared shortest distance from points[i] to entities[i]