629MatrixCSR<U, V, W, X>::MatrixCSR(
const SparsityType& p,
BlockMode mode)
630 : _index_maps({p.index_map(0), p.index_map(1)}), _block_mode(mode),
631 _bs({p.block_size(0), p.block_size(1)}),
632 _data(p.graph().first.size() * _bs[0] * _bs[1], 0),
633 _cols(p.graph().first.begin(), p.graph().first.end()),
634 _row_ptr(p.graph().second.begin(), p.graph().second.end()),
640 for (
int i = 0; i < 2; ++i)
642 auto im = _index_maps[i];
643 std::int32_t size_local = im->size_local() * _bs[i];
644 std::span ghost_i = im->ghosts();
645 std::vector<std::int64_t> ghosts;
646 const std::vector<int> ghost_owner_i(im->owners().begin(),
648 std::vector<int> src_rank;
649 for (std::size_t j = 0; j < ghost_i.size(); ++j)
651 for (
int k = 0; k < _bs[i]; ++k)
653 ghosts.push_back(ghost_i[j] * _bs[i] + k);
654 src_rank.push_back(ghost_owner_i[j]);
658 std::array<std::vector<int>, 2> src_dest0
659 = {std::vector(_index_maps[i]->src().begin(),
660 _index_maps[i]->src().end()),
661 std::vector(_index_maps[i]->dest().begin(),
662 _index_maps[i]->dest().end())};
663 _index_maps[i] = std::make_shared<common::IndexMap>(
664 _index_maps[i]->comm(), size_local, src_dest0, ghosts, src_rank);
669 column_container_type new_cols;
670 new_cols.reserve(_data.size());
671 rowptr_container_type new_row_ptr{0};
672 new_row_ptr.reserve(_row_ptr.size() * _bs[0]);
673 std::span<const std::int32_t> num_diag_nnz = p.off_diagonal_offsets();
674 for (std::size_t i = 0; i < _row_ptr.size() - 1; ++i)
677 for (
int q0 = 0; q0 < _bs[0]; ++q0)
679 _off_diagonal_offset.push_back(new_row_ptr.back()
680 + num_diag_nnz[i] * _bs[1]);
681 for (
auto j = _row_ptr[i]; j < _row_ptr[i + 1]; ++j)
683 for (
int q1 = 0; q1 < _bs[1]; ++q1)
684 new_cols.push_back(_cols[j] * _bs[1] + q1);
686 new_row_ptr.push_back(new_cols.size());
690 _row_ptr = new_row_ptr;
697 std::span<const std::int32_t> num_diag_nnz = p.off_diagonal_offsets();
698 _off_diagonal_offset.reserve(num_diag_nnz.size());
699 std::ranges::transform(num_diag_nnz, _row_ptr,
700 std::back_inserter(_off_diagonal_offset),
705 std::array local_size
706 = {_index_maps[0]->size_local(), _index_maps[1]->size_local()};
708 = {_index_maps[0]->local_range(), _index_maps[1]->local_range()};
709 std::span ghosts1 = _index_maps[1]->ghosts();
711 std::span ghosts0 = _index_maps[0]->ghosts();
712 std::span src_ranks = _index_maps[0]->src();
713 std::span dest_ranks = _index_maps[0]->dest();
717 MPI_Dist_graph_create_adjacent(_index_maps[0]->comm(), dest_ranks.size(),
718 dest_ranks.data(), MPI_UNWEIGHTED,
719 src_ranks.size(), src_ranks.data(),
720 MPI_UNWEIGHTED, MPI_INFO_NULL,
false, &comm);
721 _comm = dolfinx::MPI::Comm(comm,
false);
725 _ghost_row_to_rank.reserve(_index_maps[0]->owners().
size());
726 for (
int r : _index_maps[0]->owners())
728 auto it = std::ranges::lower_bound(src_ranks, r);
729 assert(it != src_ranks.end() and *it == r);
730 std::size_t pos = std::distance(src_ranks.begin(), it);
731 _ghost_row_to_rank.push_back(pos);
735 std::vector<std::int32_t> data_per_proc(src_ranks.size(), 0);
736 for (std::size_t i = 0; i < _ghost_row_to_rank.size(); ++i)
738 assert(_ghost_row_to_rank[i] < (
int)data_per_proc.size());
739 std::size_t pos = local_size[0] + i;
740 data_per_proc[_ghost_row_to_rank[i]] += _row_ptr[pos + 1] - _row_ptr[pos];
744 _val_send_disp.resize(src_ranks.size() + 1, 0);
745 std::partial_sum(data_per_proc.begin(), data_per_proc.end(),
746 std::next(_val_send_disp.begin()));
749 std::vector<std::int64_t> ghost_index_data(2 * _val_send_disp.back());
751 std::vector<int> insert_pos = _val_send_disp;
752 for (std::size_t i = 0; i < _ghost_row_to_rank.size(); ++i)
754 int rank = _ghost_row_to_rank[i];
755 std::int32_t row_id = local_size[0] + i;
756 for (
int j = _row_ptr[row_id]; j < _row_ptr[row_id + 1]; ++j)
759 std::int32_t idx_pos = 2 * insert_pos[
rank];
762 ghost_index_data[idx_pos] = ghosts0[i];
763 if (std::int32_t col_local = _cols[j]; col_local < local_size[1])
764 ghost_index_data[idx_pos + 1] = col_local + local_range[1][0];
766 ghost_index_data[idx_pos + 1] = ghosts1[col_local - local_size[1]];
768 insert_pos[
rank] += 1;
774 std::vector<std::int64_t> ghost_index_array;
775 std::vector<int> recv_disp;
777 std::vector<int> send_sizes;
778 std::ranges::transform(data_per_proc, std::back_inserter(send_sizes),
779 [](
auto x) {
return 2 * x; });
781 std::vector<int> recv_sizes(dest_ranks.size());
782 send_sizes.reserve(1);
783 recv_sizes.reserve(1);
784 MPI_Neighbor_alltoall(send_sizes.data(), 1, MPI_INT, recv_sizes.data(), 1,
785 MPI_INT, _comm.comm());
788 std::vector<int> send_disp{0};
789 std::partial_sum(send_sizes.begin(), send_sizes.end(),
790 std::back_inserter(send_disp));
792 std::partial_sum(recv_sizes.begin(), recv_sizes.end(),
793 std::back_inserter(recv_disp));
795 ghost_index_array.resize(recv_disp.back());
796 MPI_Neighbor_alltoallv(ghost_index_data.data(), send_sizes.data(),
797 send_disp.data(), MPI_INT64_T,
798 ghost_index_array.data(), recv_sizes.data(),
799 recv_disp.data(), MPI_INT64_T, _comm.comm());
804 _val_recv_disp.resize(recv_disp.size());
805 int bs2 = _bs[0] * _bs[1];
806 std::ranges::transform(recv_disp, _val_recv_disp.begin(),
807 [&bs2](
auto d) { return bs2 * d / 2; });
808 std::ranges::transform(_val_send_disp, _val_send_disp.begin(),
809 [&bs2](
auto d) { return d * bs2; });
812 std::vector<std::pair<std::int64_t, std::int32_t>> global_to_local;
813 global_to_local.reserve(ghosts1.size());
814 for (std::int64_t idx : ghosts1)
815 global_to_local.push_back({idx, global_to_local.size() + local_size[1]});
816 std::ranges::sort(global_to_local);
820 for (std::size_t i = 0; i < ghost_index_array.size(); i += 2)
823 std::int32_t local_row = ghost_index_array[i] -
local_range[0][0];
824 assert(local_row >= 0 and local_row < local_size[0]);
827 std::int32_t local_col = ghost_index_array[i + 1] -
local_range[1][0];
828 if (local_col < 0 or local_col >= local_size[1])
830 auto it = std::ranges::lower_bound(
831 global_to_local, std::pair(ghost_index_array[i + 1], -1),
832 [](
auto a,
auto b) {
return a.first < b.first; });
833 assert(it != global_to_local.end()
834 and it->first == ghost_index_array[i + 1]);
835 local_col = it->second;
837 auto cit0 = std::next(_cols.begin(), _row_ptr[local_row]);
838 auto cit1 = std::next(_cols.begin(), _row_ptr[local_row + 1]);
841 auto cit = std::lower_bound(cit0, cit1, local_col);
843 assert(*cit == local_col);
844 std::size_t d = std::distance(_cols.begin(), cit);
845 _unpack_pos.push_back(d);
848 _unpack_pos.shrink_to_fit();
934 std::span<const std::int64_t> Arow_ptr(
row_ptr().data(), nrowslocal + 1);
935 std::span<const std::int32_t> Acols(
cols().data(), Arow_ptr[nrowslocal]);
936 std::span<const std::int64_t> Aoff_diag_offset(
off_diag_offset().data(),
938 std::span<const Scalar> Avalues(
values().data(),
939 Arow_ptr[nrowslocal] * _bs[0] * _bs[1]);
941 std::span<const Scalar> _x = x.
array();
942 std::span<Scalar> _y = y.
array();
944 std::span<const std::int64_t> Arow_begin(Arow_ptr.data(), nrowslocal);
945 std::span<const std::int64_t> Arow_end(Arow_ptr.data() + 1, nrowslocal);
950 int ncolslocal =
index_map(1)->size_local();
951 std::fill(std::next(_y.begin(), ncolslocal * _bs[1]), _y.end(), Scalar(0));
953 impl::spmvT<Scalar, 1>(Avalues, Aoff_diag_offset, Arow_end, Acols, _x, _y,
956 impl::spmvT<Scalar, -1>(Avalues, Aoff_diag_offset, Arow_end, Acols, _x, _y,
962 impl::spmvT<Scalar, 1>(Avalues, Arow_begin, Aoff_diag_offset, Acols, _x, _y,
965 impl::spmvT<Scalar, -1>(Avalues, Arow_begin, Aoff_diag_offset, Acols, _x,