pack.h

Go to the documentation of this file.

// Copyright (C) 2013-2025 Garth N. Wells
//
// This file is part of DOLFINx (https://www.fenicsproject.org)
//
// SPDX-License-Identifier:    LGPL-3.0-or-later
 
#pragma once
 
#include "Constant.h"
#include "DofMap.h"
#include "FiniteElement.h"
#include "Form.h"
#include "Function.h"
#include "FunctionSpace.h"
#include "traits.h"
#include <array>
#include <basix/mdspan.hpp>
#include <concepts>
#include <dolfinx/mesh/Topology.h>
#include <span>
#include <stdexcept>
#include <type_traits>
#include <vector>

 
namespace dolfinx::fem
{
template <dolfinx::scalar T, std::floating_point U>
class Expression;
 
namespace impl
{
template <dolfinx::scalar T, std::floating_point U>
std::span<const std::uint32_t>
get_cell_orientation_info(const Function<T, U>& coefficient)
{
  std::span<const std::uint32_t> cell_info;
  auto element = coefficient.function_space()->element();
  assert(element);
  if (element->needs_dof_transformations())
  {
    auto mesh = coefficient.function_space()->mesh();
    mesh->topology_mutable()->create_entity_permutations();
    cell_info = std::span(mesh->topology()->get_cell_permutation_info());
  }
 
  return cell_info;
}

template <int _bs, dolfinx::scalar T>
void pack_impl(std::span<T> coeffs, std::int32_t cell, int bs,
               std::span<const T> v, std::span<const std::uint32_t> cell_info,
               const DofMap& dofmap, auto transform)
{
  std::span<const std::int32_t> dofs = dofmap.cell_dofs(cell);
  for (std::size_t i = 0; i < dofs.size(); ++i)
  {
    if constexpr (_bs < 0)
    {
      const int pos_c = bs * i;
      const int pos_v = bs * dofs[i];
      for (int k = 0; k < bs; ++k)
        coeffs[pos_c + k] = v[pos_v + k];
    }
    else
    {
      assert(_bs == bs);
      const int pos_c = _bs * i;
      const int pos_v = _bs * dofs[i];
      for (int k = 0; k < _bs; ++k)
        coeffs[pos_c + k] = v[pos_v + k];
    }
  }
 
  transform(coeffs, cell_info, cell, 1);
}

template <dolfinx::scalar T, std::floating_point U>
void pack_coefficient_entity(std::span<T> c, int cstride,
                             const Function<T, U>& u,
                             std::span<const std::uint32_t> cell_info,
                             auto cells, std::int32_t offset)
{
  static_assert(cells.rank() == 1);
 
  // Read data from coefficient Function u
  std::span<const T> v = u.x()->array();
  const DofMap& dofmap = *u.function_space()->dofmap();
  auto element = u.function_space()->element();
  assert(element);
  int space_dim = element->space_dimension();
 
  // Transformation from conforming degrees-of-freedom to reference
  // degrees-of-freedom
  auto transformation
      = element->template dof_transformation_fn<T>(doftransform::transpose);
  const int bs = dofmap.bs();
  switch (bs)
  {
  case 1:
    for (std::size_t e = 0; e < cells.extent(0); ++e)
    {
      if (std::int32_t cell = cells(e); cell >= 0)
      {
        auto cell_coeff = c.subspan(e * cstride + offset, space_dim);
        pack_impl<1>(cell_coeff, cell, bs, v, cell_info, dofmap,
                     transformation);
      }
    }
    break;
  case 2:
    for (std::size_t e = 0; e < cells.extent(0); ++e)
    {
      if (std::int32_t cell = cells(e); cell >= 0)
      {
        auto cell_coeff = c.subspan(e * cstride + offset, space_dim);
        pack_impl<2>(cell_coeff, cell, bs, v, cell_info, dofmap,
                     transformation);
      }
    }
    break;
  case 3:
    for (std::size_t e = 0; e < cells.extent(0); ++e)
    {
      if (std::int32_t cell = cells(e); cell >= 0)
      {
        auto cell_coeff = c.subspan(e * cstride + offset, space_dim);
        pack_impl<3>(cell_coeff, cell, bs, v, cell_info, dofmap,
                     transformation);
      }
    }
    break;
  default:
    for (std::size_t e = 0; e < cells.extent(0); ++e)
    {
      if (std::int32_t cell = cells(e); cell >= 0)
      {
        auto cell_coeff = c.subspan(e * cstride + offset, space_dim);
        pack_impl<-1>(cell_coeff, cell, bs, v, cell_info, dofmap,
                      transformation);
      }
    }
    break;
  }
}
} // namespace impl

template <dolfinx::scalar T, std::floating_point U>
std::pair<std::vector<T>, int>
allocate_coefficient_storage(const Form<T, U>& form, IntegralType integral_type,
                             int id)
{
  std::size_t num_entities = 0;
  int cstride = 0;
  if (const std::vector<std::shared_ptr<const Function<T, U>>>& coefficients
      = form.coefficients();
      !coefficients.empty())
  {
    const std::vector<int> offsets = form.coefficient_offsets();
    cstride = offsets.back();
    num_entities = form.domain(integral_type, id, 0).size();
    if (integral_type == IntegralType::exterior_facet
        or integral_type == IntegralType::interior_facet)
    {
      num_entities /= 2;
    }
  }
 
  return {std::vector<T>(num_entities * cstride), cstride};
}

template <dolfinx::scalar T, std::floating_point U>
std::map<std::pair<IntegralType, int>, std::pair<std::vector<T>, int>>
allocate_coefficient_storage(const Form<T, U>& form)
{
  std::map<std::pair<IntegralType, int>, std::pair<std::vector<T>, int>> coeffs;
  for (fem::IntegralType type : form.integral_types())
  {
    for (int id : form.integral_ids(type))
    {
      coeffs.emplace_hint(coeffs.end(), std::pair{type, id},
                          allocate_coefficient_storage(form, type, id));
    }
  }
 
  return coeffs;
}

template <dolfinx::scalar T, std::floating_point U>
void pack_coefficients(const Form<T, U>& form,
                       std::map<std::pair<IntegralType, int>,
                                std::pair<std::vector<T>, int>>& coeffs)
{
  const std::vector<std::shared_ptr<const Function<T, U>>>& coefficients
      = form.coefficients();
  const std::vector<int> offsets = form.coefficient_offsets();
 
  for (auto& [intergal_data, coeff_data] : coeffs)
  {
    auto [integral_type, id] = intergal_data;
    std::vector<T>& c = coeff_data.first;
    int cstride = coeff_data.second;
    if (!coefficients.empty())
    {
      switch (integral_type)
      {
      case IntegralType::cell:
      {
        // Iterate over coefficients that are active in cell integrals
        for (int coeff : form.active_coeffs(IntegralType::cell, id))
        {
          // Get coefficient mesh
          auto mesh = coefficients[coeff]->function_space()->mesh();
          assert(mesh);
 
          // Other integrals in the form might have coefficients defined
          // over entities of codim > 0, which don't make sense for cell
          // integrals, so don't pack them.
          if (int codim
              = form.mesh()->topology()->dim() - mesh->topology()->dim();
              codim > 0)
          {
            throw std::runtime_error("Should not be packing coefficients with "
                                     "codim>0 in a cell integral");
          }
 
          std::span<const std::int32_t> cells_b
              = form.domain_coeff(IntegralType::cell, id, coeff);
          md::mdspan cells(cells_b.data(), cells_b.size());
          std::span<const std::uint32_t> cell_info
              = impl::get_cell_orientation_info(*coefficients[coeff]);
          impl::pack_coefficient_entity(std::span(c), cstride,
                                        *coefficients[coeff], cell_info, cells,
                                        offsets[coeff]);
        }
        break;
      }
      case IntegralType::exterior_facet:
      {
        // Iterate over coefficients coefficients that are active in
        // exterior facet integrals
        for (int coeff : form.active_coeffs(IntegralType::exterior_facet, id))
        {
          auto mesh = coefficients[coeff]->function_space()->mesh();
          std::span<const std::int32_t> facets_b
              = form.domain_coeff(IntegralType::exterior_facet, id, coeff);
          md::mdspan<const std::int32_t,
                     md::extents<std::size_t, md::dynamic_extent, 2>>
              facets(facets_b.data(), facets_b.size() / 2, 2);
          auto cells = md::submdspan(facets, md::full_extent, 0);
 
          std::span<const std::uint32_t> cell_info
              = impl::get_cell_orientation_info(*coefficients[coeff]);
          impl::pack_coefficient_entity(std::span(c), cstride,
                                        *coefficients[coeff], cell_info, cells,
                                        offsets[coeff]);
        }
        break;
      }
      case IntegralType::interior_facet:
      {
        // Iterate over coefficients that are active in interior
        // facet integrals
        for (int coeff : form.active_coeffs(IntegralType::interior_facet, id))
        {
          auto mesh = coefficients[coeff]->function_space()->mesh();
          std::span<const std::int32_t> facets_b
              = form.domain_coeff(IntegralType::interior_facet, id, coeff);
          md::mdspan<const std::int32_t,
                     md::extents<std::size_t, md::dynamic_extent, 4>>
              facets(facets_b.data(), facets_b.size() / 4, 4);
 
          std::span<const std::uint32_t> cell_info
              = impl::get_cell_orientation_info(*coefficients[coeff]);
 
          // Pack coefficient ['+']
          auto cells0 = md::submdspan(facets, md::full_extent, 0);
          impl::pack_coefficient_entity(std::span(c), 2 * cstride,
                                        *coefficients[coeff], cell_info, cells0,
                                        2 * offsets[coeff]);
 
          // Pack coefficient ['-']
          auto cells1 = md::submdspan(facets, md::full_extent, 2);
          impl::pack_coefficient_entity(std::span(c), 2 * cstride,
                                        *coefficients[coeff], cell_info, cells1,
                                        offsets[coeff] + offsets[coeff + 1]);
        }
        break;
      }
      default:
        throw std::runtime_error(
            "Could not pack coefficient. Integral type not supported.");
      }
    }
  }
}

template <dolfinx::scalar T, std::floating_point U>
void pack_coefficients(
    std::vector<std::reference_wrapper<const Function<T, U>>> coeffs,
    std::span<const int> offsets, fem::MDSpan2 auto entities, std::span<T> c)
{
  assert(!offsets.empty());
  const int cstride = offsets.back();
 
  if (c.size() < entities.extent(0) * offsets.back())
    throw std::runtime_error("Coefficient packing span is too small.");
 
  // Iterate over coefficients
  for (std::size_t coeff = 0; coeff < coeffs.size(); ++coeff)
  {
    std::span<const std::uint32_t> cell_info
        = impl::get_cell_orientation_info(coeffs[coeff].get());
 
    if constexpr (entities.rank() == 1)
    {
      impl::pack_coefficient_entity(std::span(c), cstride, coeffs[coeff].get(),
                                    cell_info, entities, offsets[coeff]);
    }
    else
    {
      auto cells = md::submdspan(entities, md::full_extent, 0);
      impl::pack_coefficient_entity(std::span(c), cstride, coeffs[coeff].get(),
                                    cell_info, cells, offsets[coeff]);
    }
  }
}

template <typename T>
std::vector<T>
pack_constants(std::vector<std::reference_wrapper<const fem::Constant<T>>> c)
{
  // Calculate size of array needed to store packed constants
  std::int32_t size = std::accumulate(
      c.cbegin(), c.cend(), 0, [](std::int32_t sum, auto& constant)
      { return sum + constant.get().value.size(); });
 
  // Pack constants
  std::vector<T> constant_values(size);
  std::int32_t offset = 0;
  for (auto& constant : c)
  {
    std::ranges::copy(constant.get().value,
                      std::next(constant_values.begin(), offset));
    offset += constant.get().value.size();
  }
 
  return constant_values;
}

template <typename U>
  requires std::convertible_to<
               U, fem::Expression<typename std::decay_t<U>::scalar_type,
                                  typename std::decay_t<U>::geometry_type>>
           or std::convertible_to<
               U, fem::Form<typename std::decay_t<U>::scalar_type,
                            typename std::decay_t<U>::geometry_type>>
std::vector<typename U::scalar_type> pack_constants(const U& u)
{
  using T = typename std::decay_t<U>::scalar_type;
  std::vector<std::reference_wrapper<const Constant<T>>> c;
  std::ranges::transform(u.constants(), std::back_inserter(c),
                         [](auto c) -> const Constant<T>& { return *c; });
  return fem::pack_constants(c);
}
 
} // namespace dolfinx::fem